PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_62B9BD157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 699aa    MW: 81140.6 Da    PI: 8.4628
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_62B9BD157.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.94.7e-2531121290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                             Yn+YA+  GFsvr + +++ k ++e++ r+f+Cskeg+r e+  + t+++r++ra tr+gCka+l+++ +  +g+w v+k++  HnH
  Traes_2BS_62B9BD157.1  31 HYNRYARAKGFSVRLDDKEYVKGTREVKARRFCCSKEGHRLEKYFQaTDQKREPRALTRCGCKAMLEIQHDAgRGQWFVKKFVDVHNH 118
                            6***************************************999877689999********************9*************** PP

                   FAR1  88 ela 90 
                            +la
  Traes_2BS_62B9BD157.1 119 PLA 121
                            *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2231121IPR004330FAR1 DNA binding domain
PfamPF105512.4E-34243337IPR018289MULE transposase domain
PROSITE profilePS509669.433524563IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDGHTASLEE IEEYHMMVSQ MFASEKQGYE HYNRYARAKG FSVRLDDKEY VKGTREVKAR  60
RFCCSKEGHR LEKYFQATDQ KREPRALTRC GCKAMLEIQH DAGRGQWFVK KFVDVHNHPL  120
ADPDQSAFLR SHHRMNDAHK ADAVEYGLGG LRTFQIMNVA EKQHGGYPHV GYISRDLYNF  180
FARYKKKRIL GRDADFVLNH MRVQEERDAE FFFKYTTDDE GHLRNLFWAD SQSQIDYDAF  240
GDVVVFDSTY RVNRYNLPFV AFVGLNHHRS TVVFGIGVVS DETHKSYEWL LQTFVEAMGH  300
KEPISVITDG DSAMRKAIRK ILPRTDHRLC SWHIEQNMIR HLHNPMLDDF RKLIYCRMGV  360
YQFEKSWAEF KANYEIEEEN EWMSRMYKLR KKWAAAYTKG RYFLGMQSNQ RSESLNSRLH  420
NHLDRKMSLV DVVEHTEHCI SRMRRNEAEL DAICSHSVPF TRIDACLLEI NAARIYTPKF  480
FKMVRDCIRR SCALVIQEQT TVNDLVRYEV VLKDGAEGGS RRLFSVECSF NGSLTNGAFC  540
PCRKMECEAI PCAHIFAVLV FVRAATIPPC CVSKRWTMEA KAAFVSVRNA NTHVWSEEMS  600
RYRELRNIAS IALFKVSKSG ERSPEVKDYL QSIIDGPIEN DDNTEETTFG PIPSHYSAAS  660
NASADRVLDP KIVDTKGAPC KKRMKLFMTF FGLFAMIIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233182.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5BKM90.0W5BKM9_WHEAT; Uncharacterized protein
STRINGBRADI2G21270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-94FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]